Tools

Tools for genomic epidemiology

Explore BioinfoX tools and open-source research software developed by our founder. Each entry identifies its attribution and availability.

Open source

FungiPhyloGen

Developed by BioinfoX

An automated Nextflow workflow for fungal genomic epidemiology and routine surveillance, developed through our fungal genomics work.

GitHub Zenodo

Open source

SNP2Cluster-Py

Developed by our founder, Dr Stanford Kwenda (SANBI, University of the Western Cape)

A Python tool for context-aware transmission-cluster analysis of bacterial genomic data, with visual outputs and HTML reporting for genomic surveillance.

GitHub Zenodo

In development

SNP2Cluster Platform

BioinfoX

A hosted platform from BioinfoX that builds on SNP2Cluster to support transmission-cluster analysis and genomic surveillance reporting. Register your interest to request an availability notification for this platform only.

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